Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0148
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   5.4  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 542 KHDNELIGTSNIPLKSIPAG 601
           K DN+L  T N+  K+ PAG
Sbjct: 289 KKDNKLPNTKNVRRKTNPAG 308


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 542 KHDNELIGTSNIPLKSIPAG 601
           K DN+L  T N+  K+ PAG
Sbjct: 289 KKDNKLPNTKNVRRKTNPAG 308


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 460 FSLTVSAGSKSHTSKQRESSFTVP 389
           F++++  G+ + T    ESS T+P
Sbjct: 529 FAVSLKQGTNTITRHSTESSLTIP 552


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,904
Number of Sequences: 336
Number of extensions: 3612
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)