Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0125
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.069
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   6.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 623 RNNFSIRYWSWNYRGCWHQTC 561
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -3

Query: 635  ELFNRNNFSIRYWSWNYRGCWHQTC 561
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = -3

Query: 614 FSIRYWSWNYRGCWHQ 567
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 122
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 122
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 122
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 122
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 122
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 311 HLKDASPVLDHAICKSYPDH 252
           +L D+SP L+ A C+ +  H
Sbjct: 63  NLCDSSPCLNGATCQDHTTH 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,984
Number of Sequences: 336
Number of extensions: 3630
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)