Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0122
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   0.85 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   0.85 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   2.6  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 174 WDPKDGELCLVRSKSGETLMEDRSDSDCKSIVGTGYRGERLIEPSSSWFRPKF 332
           ++P+  E+ L  ++S E  ME    +       T Y   +L+E    + R K+
Sbjct: 57  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 109


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 174 WDPKDGELCLVRSKSGETLMEDRSDSDCKSIVGTGYRGERLIEPSSSWFRPKF 332
           ++P+  E+ L  ++S E  ME    +       T Y   +L+E    + R K+
Sbjct: 77  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 129


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 304 GSISLSPLY-PVPTIDLQSESLRSSIRVSPDFDLTRH 197
           G+ S   +Y P    ++    L   +RV P+FD   H
Sbjct: 266 GAYSPKKVYAPEEVAEIVEYGLERGVRVIPEFDAPAH 302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,595
Number of Sequences: 336
Number of extensions: 2242
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)