Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0116
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.19 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
 Frame = +1

Query: 199 SGRSQ--GKP*WRTVAILTCNRSSELGIGAKD*SNHLVAGS------VRSFPQDSWRRYK 354
           SG +Q  G P     A+LTC    +     K+ SNH+V  S      +RS  +   RR +
Sbjct: 531 SGNNQPPGGPSSHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYKEHIMRSITESGGRRRQ 590

Query: 355 I---LKQSHPVKRMI 390
                K+S PV++++
Sbjct: 591 TREKRKKSLPVRKLL 605


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 168 WDPKDGELCLVRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRPKF 326
           ++P+  E+ L  ++S E  ME    +       T Y   +L+E    + R K+
Sbjct: 57  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 109


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 168 WDPKDGELCLVRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRPKF 326
           ++P+  E+ L  ++S E  ME    +       T Y   +L+E    + R K+
Sbjct: 77  FEPQQFEVSLSENRSHEPEMERPKGASNGKRARTAYTSSQLVELEREFHRSKY 129


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -3

Query: 298 GSISLSPLY-PVPTIDCTSESLRSSIRVSPDFDLTRH 191
           G+ S   +Y P    +     L   +RV P+FD   H
Sbjct: 266 GAYSPKKVYAPEEVAEIVEYGLERGVRVIPEFDAPAH 302


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 476 RSDDGAKWANFVSRTGAVG 532
           RS D A  A+ +SR  AVG
Sbjct: 88  RSGDEAALADMISRCNAVG 106


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 476 RSDDGAKWANFVSRTGAVG 532
           RS D A  A+ +SR  AVG
Sbjct: 89  RSGDEAALADMISRCNAVG 107


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 667 ASAGESCXXLADSDFHGHRPAVMSDQRLS 581
           A+ G +    A    H HRPA+   +R++
Sbjct: 289 AARGAARADGAGGPLHDHRPALAQQRRVA 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,340
Number of Sequences: 336
Number of extensions: 3592
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)