Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20028
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   0.88 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.88 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.6  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   6.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   6.2  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   6.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   6.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.2  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 251 VDRQPPLRSPFSWTWK 204
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 251 VDRQPPLRSPFSWTWK 204
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   KNAASTHIPGCDR 47
           KN  S HIPGC +
Sbjct: 312 KNIHSCHIPGCGK 324


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 433 SWSTTALPMMPCGPDSEIWSSTRS 362
           +WST   P     P    WS T S
Sbjct: 306 TWSTVQTPTTVMSPTINCWSLTSS 329


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 506 SDSTASVAGLPGVRMVTLAVIISFLVEH 423
           S   + VA  PG+R   +  ++SF+ ++
Sbjct: 107 SQKYSQVAANPGLRQAMVTSVLSFIDQY 134


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 506 SDSTASVAGLPGVRMVTLAVIISFLVEH 423
           S   + VA  PG+R   +  ++SF+ ++
Sbjct: 107 SQKYSQVAANPGLRQAMVTSVLSFIDQY 134


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 217 HGRGSHIHPEAA 182
           HG  +H+HP+ A
Sbjct: 5   HGSNTHLHPDDA 16


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 217 HGRGSHIHPEAA 182
           HG  +H+HP+ A
Sbjct: 5   HGSNTHLHPDDA 16


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 201 IFTRRQPSDAPLNVNLPI 148
           +FT    +D P+NV L +
Sbjct: 318 LFTEEDVADVPINVTLSL 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,135
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)