Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    24   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 477 KLECPNRPFIKVF*DHLNY 533
           +L CP  PFI  +  HL Y
Sbjct: 230 RLTCPKCPFITEYKHHLEY 248


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 252 YKVALGSRILSTIAHCALIVM*HKHLYVL*LMFSSHLCRGCI 377
           YK    +R+L  +  CA I    ++ Y     F  HL  G +
Sbjct: 89  YKRRTWTRLLKNLESCAKIKKTKRYCYYYYAFFGVHLAYGVV 130


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 50  RMTVCVCQGNHNTRRS 97
           R+  CVC G+  TRR+
Sbjct: 916 RVVRCVCAGSTGTRRA 931


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 629 GGYLEQGHKYTALKLQK 679
           GG+ E G KY+A+  +K
Sbjct: 102 GGWAEGGSKYSAMVAEK 118


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 452 YNFIYKVGIEIFLNSNFQP 396
           YN +Y   I ++LNS   P
Sbjct: 330 YNILYFCRIMVYLNSAINP 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,880
Number of Sequences: 336
Number of extensions: 4653
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)