Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30038X
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   1.2  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   3.8  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   3.8  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    20   8.8  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 274 NTSTNGANSGP----RRRMSSNALKRSRPSARFSRAEEEKRLA 390
           +T+T   N  P    +RR ++ A KRSR + R    E   R A
Sbjct: 126 STTTQNKNDDPSYWEKRRKNNEAAKRSRDARRAKEDEIAIRCA 168


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 186 SRPSIAGEGDPEFIKR 233
           SR  +AG+ DPE  KR
Sbjct: 38  SRWMVAGKADPEMPKR 53


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 186 SRPSIAGEGDPEFIKR 233
           SR  +AG+ DPE  KR
Sbjct: 38  SRWMVAGKADPEMPKR 53


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 165 KPAPKQESRPSIAGEGDPE 221
           +PA K + RP+ A    PE
Sbjct: 251 QPATKSKPRPAPASRNAPE 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,687
Number of Sequences: 336
Number of extensions: 1051
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)