Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0037
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 557 LTYTFLAFGRAFQICKPL 504
           LT   ++F R + ICKPL
Sbjct: 159 LTILAISFERYYAICKPL 176


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 557 LTYTFLAFGRAFQICKPL 504
           LT   ++F R + ICKPL
Sbjct: 159 LTILAISFERYYAICKPL 176


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 141 N*SLLNTISRHVLPHAPSPTIT 76
           N S  ++ SRH + H P P +T
Sbjct: 149 NYSAYSSASRHHVDHQPVPYLT 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,074
Number of Sequences: 336
Number of extensions: 4187
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)