Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0032
         (467 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   4.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.7  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   7.5  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 258 SSPRVSQTV*PPPFRFDSRKASDHRSP 178
           SSP+ S    PP  R   RK   +R P
Sbjct: 92  SSPQTSAPTGPPIVRCALRKHKPNRKP 118


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 388 HPRHDRHWVSS 420
           H RH+RH+ SS
Sbjct: 89  HDRHERHFESS 99


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 350 ANIWALKQVGCTHILATTATGSLVEEYRPGD 442
           ANIW LK+V    +     T   +   + GD
Sbjct: 267 ANIWGLKKVYAPVVDGEFLTDEPIATIKSGD 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,660
Number of Sequences: 336
Number of extensions: 2093
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)