Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0004
         (543 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 127 CIDESYENVCTV 92
           C DES EN CTV
Sbjct: 134 CKDESDENSCTV 145


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 127 CIDESYENVCTV 92
           C DES EN CTV
Sbjct: 141 CKDESDENSCTV 152


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 538 FKLFSDFHYSGI--WACVTLTSPVYIYSRSALISKSLTPGNRI 416
           +  +SD    G+  W  VTL    Y+   S+ +   L  GNR+
Sbjct: 671 YTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFLKSGNRL 713


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 342 HRVVLAANSPYFQSILADVPMDHC 413
           HR+ +   SP   S + D+P   C
Sbjct: 18  HRMQIKPQSPSSSSRILDIPCKVC 41


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 342 HRVVLAANSPYFQSILADVPMDHC 413
           HR+ +   SP   S + D+P   C
Sbjct: 18  HRMQIKPQSPSSSSRILDIPCKVC 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,989
Number of Sequences: 336
Number of extensions: 3049
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)