Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0060
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.68 
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   3.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.8  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   6.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   6.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
 Frame = +2

Query: 536  TNEDLVTFVATVPPAVGCV----TASWRHATAASGSR---TRWAAPSRPASRGGPVPNSP 694
            +N ++V  V T  PA        T SW   +  +      T W  P  P S   P+P   
Sbjct: 1332 SNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNYPEWQPTEWHPPIPPTSEKPPLPEEL 1391

Query: 695  YNESYYNSLAVLLQRPDW 748
              +S Y  +        W
Sbjct: 1392 KPQSGYFKIVCYFTNWAW 1409


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 643 GCAFTACLEGGPGTQFAL 696
           GC  T C  GG  ++FA+
Sbjct: 20  GCLITNCPRGGKRSKFAI 37


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 5   YPFSLLHTSILTFASLLHAIAFHPPL-YP 88
           +P++ ++T     AS+ HA A   PL YP
Sbjct: 135 WPYAAVYTDPAFAASIFHAAATSLPLHYP 163


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 553 YICRDGTTRRWMC 591
           YIC +GT R + C
Sbjct: 182 YICLEGTAREYGC 194


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 553 YICRDGTTRRWMC 591
           YIC +GT R + C
Sbjct: 182 YICLEGTAREYGC 194


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,240
Number of Sequences: 336
Number of extensions: 3005
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)