Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0054
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.85 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.85 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 IIFGYLLACLVYGKDVTLSIG 351
           I FGYL++C+     + LSIG
Sbjct: 541 ISFGYLISCVSRSVSMALSIG 561


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 413 IIFGYLLACLVYGKDVTLSIG 351
           I FGYL++C+     + LSIG
Sbjct: 541 ISFGYLISCVSRSVSMALSIG 561


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 463  CWRILQNCLIYF 498
            CW +L NC+  F
Sbjct: 1124 CWNVLLNCVYLF 1135


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 591 YSDLNQMYDSKDVNVYHLLSGYRGLDVSKIFEFQLI 698
           Y++L ++ ++    + HLLSG   LD+      QL+
Sbjct: 187 YTNLLRIIEADFSKLNHLLSGTENLDLVLPIYSQLV 222


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 366 HVLPVYKTCEQIAKDNIHDYIT 431
           H+L +  TC QI  +    Y T
Sbjct: 327 HILSIVNTCSQIPSEVEDKYTT 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,651
Number of Sequences: 336
Number of extensions: 4557
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)