Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0051
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.052
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.84 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 14/65 (21%), Positives = 25/65 (38%)
 Frame = +1

Query: 382 APDQAGKNGMTPLHIAAQYDQQAVATTLLEKGADAKAVAKNGHTPLHIAARKNQMETAAT 561
           +P  A ++  TP+  +      A             +VA N   PLHI A++   +    
Sbjct: 10  SPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGV 69

Query: 562 LLEYG 576
           +  +G
Sbjct: 70  IRHHG 74


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = +3

Query: 312 HRSSSGCEVWEPEGCESFT----GSWCS 383
           + +S+   +W P   +SFT     SWCS
Sbjct: 210 YTNSANSSIWSPASIDSFTLEQHRSWCS 237


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 151 RRYRVETRCGEGF 113
           R+YRVE R  +GF
Sbjct: 203 RKYRVEERTSDGF 215


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 282 TPNCDHKERVHRSSSG 329
           TPNCD K  V    SG
Sbjct: 140 TPNCDVKSSVCSPGSG 155


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 282 TPNCDHKERVHRSSSG 329
           TPNCD K  V    SG
Sbjct: 140 TPNCDVKSSVCSPGSG 155


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 584 PTLSRRLGLLLCTWLPSRVTPK 649
           P +  +LG+ L  W PS  + K
Sbjct: 562 PIIQEKLGVALTNWHPSDKSAK 583


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 252 CCSSFN*TQRTPNCDHK 302
           C S+ N  QRTPN  +K
Sbjct: 310 CMSASNLIQRTPNICYK 326


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 282 TPNCDHKERVHRSSSG 329
           TPNCD K  V    SG
Sbjct: 140 TPNCDVKSSVCSPGSG 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,103
Number of Sequences: 336
Number of extensions: 3968
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)