Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0005
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.99 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    24   1.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    24   1.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   1.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.3  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 59  AWSLLDASRDVPNNCGFSG 115
           A SL++++R+VP  C F+G
Sbjct: 735 ATSLVESNRNVPQKCIFNG 753


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 415 LAPTSLPTPTSQVALLEPLPTRHPSC 492
           + P   PT +S  AL  P P    SC
Sbjct: 214 IPPAEFPTTSSSSALESPNPASRSSC 239


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 415 LAPTSLPTPTSQVALLEPLPTRHPSC 492
           + P   PT +S  AL  P P    SC
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSC 28


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 415 LAPTSLPTPTSQVALLEPLPTRHPSC 492
           + P   PT +S  AL  P P    SC
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSC 28


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 415 LAPTSLPTPTSQVALLEPLPTRHPSC 492
           + P   PT +S  AL  P P    SC
Sbjct: 214 IPPAEFPTTSSSSALESPDPASRSSC 239


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +1

Query: 433 PTPTSQVALLEPLPTRHPSCRP--CRSHRLHH--FPSQLI*SRRGLPP 564
           PTPTS +  L P P    S  P    +H + H  +PS  I     L P
Sbjct: 313 PTPTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPYPSHSIYPSSNLMP 360


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 336 LISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGP 458
           LI QP+  S    +   PQWP ++ +     +P T   +GP
Sbjct: 64  LIPQPLHPSVP--RLGHPQWPFAWGSLXRSSSPQTSAPTGP 102


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 114 PEKPQLLGTSREASRRLQAQQPRQLIKHT 28
           PEK    G +   S   QA QP   I+H+
Sbjct: 117 PEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +2

Query: 533 SSSDQEEVCPRAGDNLHRTYYLHRCSPRSFLSSV 634
           S+S +++   + GD+ H+T++L + +P + L ++
Sbjct: 258 SNSSEKKSSIQHGDDAHKTHHLDK-NPENTLGTM 290


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 SNHLPR*NSSPGFDLLRFFDSFNLATYCVF 361
           S HLP+ +++  FD+ R      L T C F
Sbjct: 314 SQHLPKFSAANFFDIERSTILSVLGTACTF 343


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 329 DSFNLATYCVFCSFYQEALST 391
           DSF L  +  +CS  Q  LST
Sbjct: 225 DSFTLEQHRSWCSSSQPVLST 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,608
Number of Sequences: 336
Number of extensions: 2917
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)