Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.12 
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   1.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   2.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   7.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   7.7  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 175 SSNAFRFEGWGSRCNYTETLQLISQGGWRI 86
           + N+ ++ G      Y E ++L  +GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 222 TRGPTTSNYRKYNYCGFHFFIL 287
           +RGP   N RK     FHF IL
Sbjct: 118 SRGPKWQNRRKILTPAFHFNIL 139


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 53  WLLEPIDIYNVNAPPTLRYKL 115
           WL  P  + N   P +LR+KL
Sbjct: 7   WLTPPHSLGNTVTPVSLRFKL 27


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 355 SNQIRTHQMFTIDFLGEGI 299
           S++ RTHQ F ++   EGI
Sbjct: 371 SDKQRTHQPFLLNIPSEGI 389


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
 Frame = +1

Query: 58  TGAHRHLQRKCATHLEI*VARSQYSYNGYPTLQTE---THYCFTAEI----GRAVVPTRA 216
           TGA R + ++C   L          + G   L TE        T E     GRAV  T +
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPESLHYEGRAVDITTS 63

Query: 217 DSQEVLPPVITANIITAGFIFSFYYTMLFLH 309
           D       ++    + AGF + +Y +   +H
Sbjct: 64  DRDRSKYGMLARLAVEAGFDWVYYESRAHIH 94


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 169 NAFRFEGWGSRCNYTETLQLISQGGW 92
           +A R+ G      Y E ++  + GGW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 175 FTAEIGRAVVPT 210
           F   +GRAVVPT
Sbjct: 459 FPGGLGRAVVPT 470


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 228 GPTTSNYRKYNYCGFHFFIL 287
           GP   N RK     FHF IL
Sbjct: 120 GPKWQNRRKILTPAFHFNIL 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,369
Number of Sequences: 336
Number of extensions: 2441
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)