Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.40 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.6  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 139 DKSSVSV*QHNDYTGRSGSWMVWSRSENVFV 47
           +K  V V +H D  G+   WM+   +E+VF+
Sbjct: 138 NKCFVKVPRHYDDPGKGNYWMLDPSAEDVFI 168



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 390 GTGPPLECS 364
           GT PPL+CS
Sbjct: 59  GTPPPLDCS 67


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -2

Query: 158 ITSPTLRQEFCLSL 117
           +T+PT++++FC  L
Sbjct: 181 VTNPTIKEDFCAVL 194


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 6   TQRADAQYHHGVTGTKTFSLRDQTIHDPDL 95
           + R+ A  +  + GT+   LR    H PDL
Sbjct: 44  SDRSAAYTNRELYGTRALPLRSAVEHIPDL 73


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 176 GSGNPLTPGGRSS 214
           GSGN   PGG SS
Sbjct: 530 GSGNNQPPGGPSS 542


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,296
Number of Sequences: 336
Number of extensions: 3763
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)