Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0080
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    25   0.67 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.67 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.67 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.6  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 411 RCQWRPSSGYTCAPRPLRETSLPAQRQRRVQ 503
           RC  RP+SG+      L E  L  +++ RV+
Sbjct: 64  RCYLRPASGFQSLQFRLLENKLGVRQENRVK 94


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 411 RCQWRPSSGYTCAPRPLRETSLPAQRQRRVQ 503
           RC  RP+SG+      L E  L  +++ RV+
Sbjct: 124 RCYLRPASGFQSLQFRLLENKLGVRQENRVK 154


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 411 RCQWRPSSGYTCAPRPLRETSLPAQRQRRVQ 503
           RC  RP+SG+      L E  L  +++ RV+
Sbjct: 124 RCYLRPASGFQSLQFRLLENKLGVRQENRVK 154


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
          orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 37 SASSVRCVANVSMNCQP 87
          S +S+ CV+  SMNC P
Sbjct: 28 SMNSMSCVSMPSMNCSP 44


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 117 ARSTRISYNVRLAVHRDVCDTPYRTCACDVSAPTSNEPP 1
           A+   +S NV+ A H  +  TP    A   +  ++  PP
Sbjct: 15  AQIPAMSMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSPP 53



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 424 LHWHLGARDGYC*W 383
           L WH G R   C W
Sbjct: 336 LRWHTGERPFVCNW 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,155
Number of Sequences: 336
Number of extensions: 3198
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)