Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.79 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.6  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   9.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 317 N*HIFGGYYDI*LNPIILCHK*DKSDAHVEFFKNK 421
           N ++ GG  +I    I+LC K  K D  V FF+ K
Sbjct: 250 NSYVDGGRNEI----ILLCEKVAKEDIQVRFFEEK 280


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 177 INKLFIIRVKFMNTNYNMTFTYEEALFILVFYLASIYFRLLQVGTLQINIS-LGDIMTFS 353
           +NK+  +  +F +    +    E+    + F+L S++  +L +G L I+   + +++ F 
Sbjct: 107 LNKMIRLDERFQSVGLQIDTVREKRRIKIHFFLRSLFAIMLPLGILLISQDVIANVLLFI 166

Query: 354 LIL 362
            I+
Sbjct: 167 FIV 169


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 217 VFINFTLIINNLLMTVPNANLHC 149
           VFIN TLII N+      A   C
Sbjct: 559 VFINGTLIIENVERASDQATYDC 581


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 636  WSKNLPKRPGRAKKKS 589
            +S NLPKR    +KKS
Sbjct: 1283 FSTNLPKRETEVRKKS 1298


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 199 LIINNLLMTVPNANLHCFN 143
           +++ +++MT+   N +CFN
Sbjct: 167 VVMTSVIMTLALGNPYCFN 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,124
Number of Sequences: 336
Number of extensions: 3095
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)