Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0070
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.1  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   4.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 526 GSQIPSKLNIIQRCSC*ENYRS*ICNIQCRGC 431
           G     K+N  Q C C E +   +CNI    C
Sbjct: 80  GGTCVDKINAFQ-CICKEGWEGALCNINTDDC 110


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 164 DKVTEPKKVIQRNIEVEPKVKDAKVS 87
           DK+ +P+KV+      EP   D K+S
Sbjct: 90  DKLEKPRKVLPNFKTDEPICPDGKLS 115


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 248 PLGSLYYCHTSEYRSCD 298
           P G ++  ++SEY  CD
Sbjct: 69  PDGMVFNDYSSEYEKCD 85


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 54  GYARPRRNILNTYFSIFHFWFYFNITL 134
           GY   R    N  F +FH  F F+I +
Sbjct: 653 GYVVLRLRANNPGFWLFHCHFLFHIVI 679


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,180
Number of Sequences: 336
Number of extensions: 2545
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)