Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0068
         (532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   0.31 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.8  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    21   8.9  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 282 PICDRVPNRNAISSLSLPR*WEPRGGKSRI 371
           P+C+  PN N     S  R W+ +GG  R+
Sbjct: 154 PLCNDDPNGNVPLGKSCNRYWQCQGGYPRL 183


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 417 LRITPGDDRKVMSWRESLTFPPEVPISEEARETILRFCSEPDR 289
           L  T GD    +    S TFPP  P+S+    +  +FC+  +R
Sbjct: 516 LAATGGDHVISLIDEISFTFPPSPPLSQIHDLSPDQFCNGDNR 558


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 363 TFPPEVPISEEARETILRFCSEPDRRLGSQ 274
           T  PEV   EEA+  +    SEP+++  SQ
Sbjct: 157 TVVPEVGGVEEAKGPVDLSKSEPEKKTESQ 186


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 71  HKLHVQTFRRPHPARDAHKEM 9
           H  H+Q  + PHPA  AH  +
Sbjct: 110 HLSHMQFMQLPHPAA-AHSAL 129


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 510 FFQDWVRPLQRTGEASGVIMYEMLIG 433
           F  DW  P QR G     + +  L+G
Sbjct: 138 FDLDWEYPCQRGGADEDKVNFVTLLG 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,743
Number of Sequences: 336
Number of extensions: 2913
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)