Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0050
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   5.8  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.8  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   7.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   7.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   7.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   7.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   7.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   7.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   7.7  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   FFKREKYFHIFTNMEDIIVWNNLKLKNTLSAHVTFIQRDIF 125
           FF +  Y HIF+ M+  IV   +    TL     ++  D+F
Sbjct: 193 FFGKMSYSHIFSLMDYNIVMALVLQFITLQHTFIWVFNDVF 233


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   FFKREKYFHIFTNMEDIIVWNNLKLKNTLSAHVTFIQRDIF 125
           FF +  Y HIF+ M+  IV   +    TL     ++  D+F
Sbjct: 193 FFGKMSYSHIFSLMDYNIVMALVLQFITLQHTFIWVFNDVF 233


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   FFKREKYFHIFTNMEDIIVWNNLKLKNTLSAHVTFIQRDIF 125
           FF +  Y HIF+ M+  IV   +    TL     ++  D+F
Sbjct: 193 FFGKMSYSHIFSLMDYNIVMALVLQFITLQHTFIWVFNDVF 233


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 103 LSVSTSPPGKPATSTASQ 120


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 LSTTAAPPFKPKRITASR 456
           LS + +PP KP   TAS+
Sbjct: 147 LSVSTSPPGKPATSTASQ 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,317
Number of Sequences: 336
Number of extensions: 3952
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)