Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0046
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.60 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.0  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   9.8  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +1

Query: 307 ISIHGRESNNL--ARILQTYYET------SHHPSLIWACVPMLCSRTY 426
           I ++ ++++NL  +++L TY +       SH P   W C+   C R +
Sbjct: 22  IYLYWQQTSNLTTSKLLYTYRQPYPRQKKSHPPQWTWQCINQRCERRH 69


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 337 LARILQTYYETSHHPSLIWACVPMLCSR 420
           L  ++ T YE  +H +++W+C    C R
Sbjct: 241 LTYLIWTIYEM-YHLAILWSCTSTNCPR 267


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 469 HSKLSLLHHLQCIL 428
           HSK  LL+++ C+L
Sbjct: 48  HSKRLLLNYINCLL 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,942
Number of Sequences: 336
Number of extensions: 3105
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)