Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0040
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 348 HKKLFVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQ 238
           H+K  + +L+G  +V    V    EP  V     LQQ
Sbjct: 3   HEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQ 39


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 348 HKKLFVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQ 238
           H+K  + +L+G  +V    V    EP  V     LQQ
Sbjct: 3   HEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQ 39


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 348 HKKLFVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQ 238
           H+K  + +L+G  +V    V    EP  V     LQQ
Sbjct: 3   HEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQ 39


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 348 HKKLFVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQ 238
           H+K  + +L+G  +V    V    EP  V     LQQ
Sbjct: 3   HEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQ 39


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 348 HKKLFVTDLIGSIDVSRVSVEQAREPGRVTARRRLQQ 238
           H+K  + +L+G  +V    V    EP  V     LQQ
Sbjct: 3   HEKRLLNNLLGPYNVLERPVANESEPLEVKFGLTLQQ 39


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 155 PSCVNLRWKGFGCVLE*WSEGEWVWP 232
           P CV + W      L  W+ G+  +P
Sbjct: 326 PICVQIPWDKNAEALAKWANGQTGFP 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,573
Number of Sequences: 336
Number of extensions: 1245
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)