Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0033
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.3  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   5.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.1  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 379 RSSLYNRRNNRFHNGQYRGSNHSRRR 302
           R++  +  NNR+HN     SN+  R+
Sbjct: 365 RNNQPSTSNNRWHNNNGNNSNNHWRK 390


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -2

Query: 518 VRHQDARRQDVQLQNIHRQDIHHQGFQHQDVQR 420
           V H   +     + N+H  D+HH    + D ++
Sbjct: 390 VTHSGHKLAKASIVNLHIYDLHHNPAIYPDPEK 422


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 37 QSCCATISSTGRDSFNGVCG 96
          +SC A    +GR+S   +CG
Sbjct: 20 ESCIAVGVGSGRNSAPSICG 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,358
Number of Sequences: 336
Number of extensions: 1769
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)