Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.2  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 137 AFRPKSAPNRVMLWVGAFVVQQST*VLGTPNIQNLASNGSHLSQFWYNALD 289
           A R K+   +++L +G +         G+   + L SN   ++QF Y+A+D
Sbjct: 582 ALREKNPDLKILLAIGGWA-------FGSTPFKELTSNVFRMNQFVYDAID 625


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 69  LKCVTSTCNLLVNLIFQKSGSIMPSGQNPHQTGSCCG-WVHLLFNNPRRFLELQIY--KI 239
           L+ V S  N+L   +  ++G ++ S    + T   CG W  +  +  +RF   +IY   +
Sbjct: 195 LQFVDSEGNILEEFVLSRAGGLVNS-LYQNATRKVCGVWKRIPHDYRKRFRMEKIYVALV 253

Query: 240 WQVTE 254
           W V +
Sbjct: 254 WGVKD 258


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 253 SVTCQILYIWS--SKNLRGLLNNKCT 182
           SVTC + Y WS        ++N+ C+
Sbjct: 144 SVTCYVTYAWSPIDHTESNIINDMCS 169


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 407 N*LQEMVAGKSYHLNQWFPNLFCVPPTLRINYFLAPPF 520
           N LQE    + Y  NQ  P +   P       + APP+
Sbjct: 25  NFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPY 62


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 407 N*LQEMVAGKSYHLNQWFPNLFCVPPTLRINYFLAPPF 520
           N LQE    + Y  NQ  P +   P       + APP+
Sbjct: 16  NFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPY 53


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 334 IIKQYLKGNENFKXNIQSIIPKLRQMTSVT 245
           IIK    GN N +  +  I  ++ Q  SVT
Sbjct: 72  IIKSRAAGNNNIQRVVPEIKIQISQQQSVT 101


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 469 ILCTAHFENKLFFSAPIFYTY 531
           +LC  +F   LFF   I+Y Y
Sbjct: 130 LLCIYYFVVPLFFLLCIYYFY 150


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 187 ICCSTIH 207
           +CCSTIH
Sbjct: 652 VCCSTIH 658



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 479  VHKISLGTTDLDDKIXLXPFPVVN 408
            +HKI+    ++ DKI +    ++N
Sbjct: 943  IHKIATNDHEIIDKIEMFSLQILN 966


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,662
Number of Sequences: 336
Number of extensions: 2868
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)