Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0022
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    27   0.19 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.3  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.4  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 309 LPLGTVLGLGTFAAIQKGHLKPNP-RFGP 392
           LP+GT +G+G F   +     PNP +F P
Sbjct: 82  LPVGTTVGIGQFLVHRNPKYFPNPDKFDP 110


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 303 FGRNSLDCIQLTLSAHLEKT---YTAKQERMGLVHR 205
           F +  L C+  TLS +LE+T    ++ + R+ L HR
Sbjct: 220 FKKKPLLCVVSTLSCYLERTELLRSSGETRLFLTHR 255


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 627 DLDTNRPVFSEDTYR 671
           DLD N P F++  YR
Sbjct: 216 DLDMNHPGFADKEYR 230


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   YKWTELKAYPSVVSRKS 56
           Y WTE+ A+ +V   K+
Sbjct: 59  YSWTEINAFANVSPSKT 75


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 100 DYLSTFVLERNIIDT 56
           D+L+TF+ E+NI  T
Sbjct: 423 DFLATFLSEQNIQST 437


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 6   YKWTELKAYPSVVSRKS 56
           Y WTE+ A+ +V   K+
Sbjct: 59  YSWTEINAFANVSPPKT 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,035
Number of Sequences: 336
Number of extensions: 3470
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)