Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0019
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   1.6  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.8  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 140 IKTVIERDRQKRNSDYDSETWIFSGSKDGDLRDK 241
           IK V+E++R+K  SD ++E       ++G+ +DK
Sbjct: 211 IKLVVEKEREKELSDDEAEE--EKKEEEGEDKDK 242


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 455 LSYQEIC-MSRDKIQP-SLHYICDTLVEYYHLLTYSL 351
           L+Y  IC M    +Q  +LH  C   V   H LTY+L
Sbjct: 153 LAYVWICEMGVVTLQAYTLHLFCVLYVVLLHFLTYNL 189


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 455 LSYQEIC-MSRDKIQP-SLHYICDTLVEYYHLLTYSL 351
           L+Y  IC M    +Q  +LH  C   V   H LTY+L
Sbjct: 153 LAYVWICEMGVVTLQAYTLHLFCVLYVVLLHFLTYNL 189


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
 Frame = -1

Query: 410 SLHYIC------DTLVEYYHLLTY 357
           S+ Y C      +TL+ YYH+ TY
Sbjct: 381 SIQYFCLMARCLNTLIFYYHISTY 404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,034
Number of Sequences: 336
Number of extensions: 4733
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)