Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0011
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    30   0.017
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +2

Query: 20  SEIVKTDAPTITEVHQKESDKKPDDTQPSKISFSTQDSINSDIYSSNESTVTNGLPTAPS 199
           + I+  ++PT  +  Q E    P    PS    ST+D   + +  SN     NG  ++PS
Sbjct: 677 NNILPPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKD--GTTVPESN-----NG--SSPS 727

Query: 200 VTTTKAPIIEEEDTSLFDHNPAFP 271
           V      +IE+   S    N +FP
Sbjct: 728 VLNAIEKLIEKSFDSRSRQNSSFP 751


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 437 ILTTEKPSVTSIETSTTAKQESTTV 511
           + TT KP     E ST+  Q +TTV
Sbjct: 427 VQTTPKPGQWVPEKSTSTTQRTTTV 451


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +2

Query: 455 PSVTSIETSTTAKQESTTVVEQLK----ESPMLNLRSAIPTEILNAPSLVPADTGEPLDD 622
           P   + ET      + +T+ +  K     SP+ +    +   + N P+L PA  G  L +
Sbjct: 14  PECENPETELLVSTKRSTISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73

Query: 623 G 625
           G
Sbjct: 74  G 74


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 542 NLRSAIP-TEILNAPSLVPADTGEPLDDGITTDVPXN 649
           +LR  +P TE  + PS +P    E  DD   +++P N
Sbjct: 196 SLRCVVPPTEDCDVPSTIPPPPPEEDDD---SNIPQN 229


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = +2

Query: 455 PSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGITT 634
           P +TS ETS         V +     P    + AIP  +     +  A TG         
Sbjct: 155 PPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFML 214

Query: 635 DVPXNILNHRGNRNVQ 682
            +  N+L+ +   N +
Sbjct: 215 PIIHNLLSDKNPPNTE 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,681
Number of Sequences: 336
Number of extensions: 3022
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)