Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0009
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       35   6e-04
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   3.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.4  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   8.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 84  IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQ-PDGSIR 260
           +P   E S  ++D+     +  Y VE  +   ++ +  T DG +V GEY ++   DGS+R
Sbjct: 177 LPSKEEVSKKIDDNQ----KVGYVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLR 231

Query: 261 KVEYTAD 281
            V YTAD
Sbjct: 232 GVRYTAD 238


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 247 SGWSREYSPFTTSPSRVSCWDL 182
           S WS   +P T     ++CW L
Sbjct: 305 STWSTVQTPTTVMSPTINCWSL 326


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 IMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 201
           ++S   LP + S+   + + T   T P+TKP
Sbjct: 155 VISSTPLPPTTSTTTRTTLTTKFTTKPSTKP 185


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 671 ILEFSKNFYSMMSXDVVCWCSV 606
           IL   KNF  ++S  ++C C V
Sbjct: 257 ILRVGKNFVCLLSLIILCDCVV 278


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 177 RRCGDPRRNMRTHTSREHDLRHDRS 103
           R+C D R     H   EHD R   S
Sbjct: 249 RQCDDHRDRPPRHFHEEHDTRRASS 273


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHT 548
           +L S  ++  T  ++SAP+    P+V    L+  G V  T
Sbjct: 57  ILFSLSILGLTEDLNSAPIRMKNPIVKYIILIDLGEVAVT 96


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 82  RFQLPSNTPIMSKIMLPRSMSSHIPSRIPTPA 177
           R  LP+N       +LP +  ++ P   P P+
Sbjct: 47  RLSLPTNPAFFHPGLLPLAWQANSPPSPPAPS 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,726
Number of Sequences: 336
Number of extensions: 2474
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)