Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0001
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   2.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   5.9  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   5.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   7.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   7.8  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    20   7.8  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 214 STINLTKEKFEVILDVQQFTPDEITV 291
           S INL KE+F+ +  +Q+    E+ V
Sbjct: 31  SDINLIKEEFDELGRLQRICNGEVAV 56


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +1

Query: 37  WWDDWE 54
           WWDD+E
Sbjct: 214 WWDDYE 219


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 EQHGCRRRQARGETGRARL 356
           E+H  RR  +RG   RA++
Sbjct: 264 EEHDTRRASSRGIIPRAKI 282


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 304 NTVVVEGKHEEKQDEHGFISRQFTPP 381
           N   +  KH    D  G + RQF  P
Sbjct: 616 NVKKINLKHALDLDRRGLLHRQFNLP 641


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 304 NTVVVEGKHEEKQDEHGFISRQFTPP 381
           N   +  KH    D  G + RQF  P
Sbjct: 616 NVKKINLKHALDLDRQGLLHRQFNLP 641


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 RPWRASLARQESSSTI 222
           R W A +A +ESSS +
Sbjct: 3   RRWSARVAPEESSSEV 18


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,955
Number of Sequences: 336
Number of extensions: 1357
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)