Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.2  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    23   3.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.1  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 115 TSSRTCGSFPRLYLKPRNVTKLS 183
           T    CG +  L+ +P +VTK+S
Sbjct: 60  TCRLVCGKYGALWPQPTSVTKIS 82


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +2

Query: 266 EMRNTFAKFCIHEGNVWTHIEQNFN 340
           ++   F    IH  N W  +E  FN
Sbjct: 80  DVHKVFQHLMIHRPNWWHELETKFN 104


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 495 RKKDVNENFTNVGLIILPAIDL 430
           RK+ VN   +N+GL++  A  L
Sbjct: 97  RKRRVNYKDSNIGLVVANAFFL 118


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 308 YLHGYKISQMYFSFQRTAAAAHSACTS 228
           Y H   +S M F      AAAHSA  S
Sbjct: 105 YNHSPHLSHMQFMQLPHPAAAHSALLS 131


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 566 DRDFHVLKVDFKRAVCIAERY*EIEKKMSTK 474
           D D    K D K+   I E+Y E E+   TK
Sbjct: 253 DEDEDTKKEDKKKKKTIKEKYTEDEELNKTK 283


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 501 RNRKKDVNENFTNV 460
           RNR K VN  F N+
Sbjct: 62  RNRVKQVNNGFANL 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,081
Number of Sequences: 336
Number of extensions: 2900
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)