Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.8  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    21   8.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  TVDEMPGSLHPLEERHRYPQQIP 124
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  TVDEMPGSLHPLEERHRYPQQIP 124
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  TVDEMPGSLHPLEERHRYPQQIP 124
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  TVDEMPGSLHPLEERHRYPQQIP 124
           T+DE    +H    R R P++IP
Sbjct: 643 TIDEAASDVHQTHMRIRPPKKIP 665


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 160 KTFTNSLTGSPV 195
           KTF ++LTG+PV
Sbjct: 141 KTFKSTLTGTPV 152


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 585  RYVINYVVYHIKQFTIIMRNTSYV 514
            R V+   VY+   FTII   +S+V
Sbjct: 1210 RMVVARYVYYATIFTIITATSSFV 1233


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 311 GFRYLRNGTAGVHTK 355
           GFRYL N     H+K
Sbjct: 134 GFRYLVNDELSAHSK 148


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 311 GFRYLRNGTAGVHTK 355
           GFRYL N     H+K
Sbjct: 448 GFRYLVNDELSAHSK 462


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 166 TFLKSFPQNLYHNEWY 119
           TFL  F   ++HNE Y
Sbjct: 83  TFLSLFIYGMHHNEKY 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,211
Number of Sequences: 336
Number of extensions: 3174
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)