Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0031
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    40   2e-05
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +1

Query: 277 GHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAG 456
           G+ +   CIA GNP P ITW   G  +       I ++      V S + I      D G
Sbjct: 428 GNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGG 487

Query: 457 VYECTADN 480
           +Y C A +
Sbjct: 488 LYRCVASS 495



 Score = 29.5 bits (63), Expect = 0.026
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 253  TFDLEYSLGHK--IAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIE 426
            +FD  ++  +K  +   C+A G P P ITW   GV+        I + P G       + 
Sbjct: 1311 SFDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSD--KIRQQPDG------SLF 1362

Query: 427  IDPATQMDAGVYECTADNMY 486
            I   ++ +AG Y C  +N Y
Sbjct: 1363 IRDVSRNNAGEYSCHVENDY 1382



 Score = 28.7 bits (61), Expect = 0.045
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 277 GHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAG 456
           G    F C  +GNP   I+W KDG     H        PI  D  ++ + I+   + D G
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG-----H--------PI--DHNEAVLRIESVRKEDKG 386

Query: 457 VYECTADN 480
           +Y+C   N
Sbjct: 387 MYQCFIRN 394



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 286 IAFLCIAKGNPRPHITWFK 342
           +A LC A+G P P   W+K
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268



 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 259 DLEYSLGHKIAFLCIAKGNPRPHITW 336
           D  ++ G   A  C A G PRP +TW
Sbjct: 707 DKAFAQGSDAAVECKADGFPRPVVTW 732



 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 298 CIAKGNPRPHITWFK-DGVEI 357
           C A GNP P I W + DG  +
Sbjct: 45  CSAHGNPTPDIIWVRSDGTAV 65


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 192 RYLPVIGNPICTFDLVLLLG 133
           R+L + GNPI T     LLG
Sbjct: 516 RHLSLEGNPITTLSNTSLLG 535


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,650
Number of Sequences: 336
Number of extensions: 3231
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)