Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0006
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   1.5  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.6  

>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 335 SIFTYNVRHNVAFFESPTVF 276
           S+F Y + HN  +F  P  F
Sbjct: 86  SLFIYGMHHNEKYFPEPEKF 105


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 432 LHPVISRICEPI--EGMDPARVADCLGLIPPDTN-KLLKEKPTTRKLMRSRTNKKS 590
           +H  ++++ E    +G+D   + D L   PP  N KL++      ++ R+ T + S
Sbjct: 16  IHEEVAQVWEQTLQKGLDTEEIKDLLQKYPPIANCKLVQAPKLNAEVKRAITQQHS 71


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 465 LVRIFLILQDVADVLDN 415
           L+RIFL  + + D+L N
Sbjct: 94  LIRIFLAAESIDDLLSN 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,632
Number of Sequences: 336
Number of extensions: 2720
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)