Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b05
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 RCPAGDPGQSERSVLGSVPDTLAP 410
           RCP+G+   SER+ L     TL+P
Sbjct: 97  RCPSGESMLSERAALLRGVPTLSP 120


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +3

Query: 441 DRPIR*NPVLGR-RLRGHLEGYGAARQRGSGQEHRSLQLQLEAAGEVAAARDCQAGRQSG 617
           ++P   +   GR R R HL  +      G  +  R+    + AAG+ AAAR       +G
Sbjct: 244 EKPFECDKCRGRFRRRHHLVHHKCG---GEEEAERAPAPAVRAAGDAAAARGAARADGAG 300

Query: 618 GMSSLPQPETPQGVL*GSRREDHSVLSPRLAG 713
           G     +P   Q      +R   +V  P+LAG
Sbjct: 301 GPLHDHRPALAQ------QRRVAAVQVPQLAG 326


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 716 LSGEPRGEYAVIFTPRASQ 660
           L GE RG++ V  TP  S+
Sbjct: 212 LEGERRGKFTVPLTPVVSE 230


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 412 PGASVSGTDPSTERSDCPGSPAGHRAPSPGDETCSTVSKL 293
           PG  + G    +  S   G PAG++     + T  T ++L
Sbjct: 42  PGLGLHGLPVDSLHSSMAGYPAGNQRKQRRERTTFTRAQL 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,694
Number of Sequences: 336
Number of extensions: 3605
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)