Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b03
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.0  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   5.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 662 LLSKIFLQTLFKYYYYYCXVLRLILI*NGFCIXEKHQQEXLIIPFKFNIIXSLY 501
           ++  + L  L   YY+YC ++ L+ I   FC      +  +I P  F    SLY
Sbjct: 273 IIFTMHLLFLLCIYYFYCALIILLCI-YYFC------RAFIIFPTHFYCAFSLY 319


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 653 KIFLQTLFKYYYYYCXVLRLI-LI*NGFCIXEKHQQEXLIIPFKFNIIXSLY 501
           KI   TL   YY     L ++ LI    C    H +   ++P  F++  S Y
Sbjct: 186 KIVKGTLKTAYYLISFALLIMRLISVCLCGASVHSESSKVLPLLFSVSSSSY 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,042
Number of Sequences: 336
Number of extensions: 1325
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)