Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b05
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    21   7.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.8  

>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 2  VLSHFHVNPTAPSLQNAK 55
          VL   H  PT   LQN K
Sbjct: 29 VLGDIHAKPTYSDLQNLK 46


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -3

Query: 495 FSNQVKYFSDFSYYFAHNYLKLH 427
           + + +K  +DF YY ++++ K++
Sbjct: 416 WDDTLKEKADFQYYVSYDFYKMN 438


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 117 LLNHQGALLAYSGYNDKDARVTAAIASNVWSAYE 218
           L  H G+++   G    +A   + I  N  +AYE
Sbjct: 138 LTRHDGSVIKNQGMPTMEAIARSGIWENCRAAYE 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,985
Number of Sequences: 336
Number of extensions: 2859
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)