Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b01
         (179 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   0.87 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    19   4.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    19   4.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    19   4.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    19   4.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    19   4.6  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    18   8.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    18   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 0.87
 Identities = 5/21 (23%), Positives = 14/21 (66%)
 Frame = -1

Query: 158 HFQLKVNFFFWLNLLIRCIFF 96
           HF L   +F++  +++ C+++
Sbjct: 95  HFLLCTYYFYYAFIILLCVYY 115



 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 143 VNFFFWLNLLIRCIF 99
           + +F++++LL  C F
Sbjct: 258 IYYFYYMHLLFCCAF 272



 Score = 18.2 bits (35), Expect = 8.1
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = -1

Query: 155 FQLKVNFFFWLNLLIRCIFF 96
           F L + +F+   +++ CI++
Sbjct: 281 FLLCIYYFYCALIILLCIYY 300


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 213 YYFFNLIVPCVLISSM 228


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 213 YYFFNLIVPCVLISSM 228


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 213 YYFFNLIVPCVLISSM 228


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 213 YYFFNLIVPCVLISSM 228


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 134 FFWLNLLIRCIFFS*M 87
           +++ NL++ C+  S M
Sbjct: 213 YYFFNLIVPCVLISSM 228


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 114 NKMYFFFINEVIYDI 70
           ++MYFF ++  I D+
Sbjct: 73  SRMYFFILHLSIADL 87


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 152 QLKVNFFFWLNL 117
           +L  NF+FW  L
Sbjct: 132 KLMKNFYFWFVL 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451
Number of Sequences: 336
Number of extensions: 137
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 39
effective length of database: 109,481
effective search space used:  2189620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)