Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a08
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   1.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.5  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   8.6  

>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 427 EQQEMLAQQGWNKVDMDVKQ 486
           +Q++   Q+GWN    DV Q
Sbjct: 221 KQEDCFYQEGWNGQSFDVSQ 240


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 237 PGYQLAHCRWYTSMWSISHLNLHIG 311
           PGY L HC +   +    +L +H+G
Sbjct: 664 PGYWLFHCHFLFHIVIGMNLIIHVG 688


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 583 CCKGINTTNCQCEP 624
           C  GIN+  C C+P
Sbjct: 38  CIDGINSYICTCKP 51


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 228 LPIDCD*NQDACYNHVKNVQRDQSI 154
           L  DCD NQ+  +N+  N +   S+
Sbjct: 25  LASDCDKNQNTEHNYTHNNEMYHSV 49


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 539 FVNVESWKPQHWKRSCTCC 483
           ++ V   K    +RSC CC
Sbjct: 72  YIQVSGSKIWQMERSCMCC 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,560
Number of Sequences: 336
Number of extensions: 3610
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)