Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0036
         (329 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    32   0.002
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   0.47 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    20   5.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   5.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.9 bits (69), Expect = 0.002
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 119  SKYTIEA-SNTAGTSSVEVT-LKVYDKPSKPEGPVIMREI--SRESVTIEWKPPLDDGGL 286
            + Y++E  + T+G   V  T +    +   PE P+ ++ +  S +S+   WKPP++  G+
Sbjct: 1171 TNYSMEVLAYTSGGDGVRTTPIHCQTEQDVPEAPIAVKALVMSTDSILASWKPPVEPNGI 1230



 Score = 26.6 bits (56), Expect = 0.067
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 131  IEASNTAGTSSVEVTLKVYDKPSKPEGP---VIMREISRESVTIEWKPP 268
            I A N  G+S    T+ +      P GP   + +    + S+ + WKPP
Sbjct: 971  IVAENEIGSSEPSETVTIITAEEVPGGPPTSIRVETNDQHSLVVYWKPP 1019



 Score = 23.8 bits (49), Expect = 0.47
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 98  ELKRSHSSKYTIEASNTAGTSSVEVTLKV 184
           E K   S KY    +N+ G  SVE  L V
Sbjct: 296 EAKVEDSGKYLCVVNNSVGGESVETVLTV 324



 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 101 LKRSHSSKYTIEASNTAGTSSVEVTLKVYDKP 196
           ++ +H   YT  ASN+A  ++   +L +   P
Sbjct: 668 VQSTHVGNYTCLASNSASVTTYTTSLFINVPP 699


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 321 GSCFSMAYFVSSRPPSSKGGFHSIVTDSRLISRIITGPSG 202
           GS  SMAY  S+  P    G H +  DS L S +   P+G
Sbjct: 26  GSSSSMAYLKSAPYPVPGLGLHGLPVDS-LHSSMAGYPAG 64


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 262 FPFNCN*FTTYFAHYNRAF 206
           FPF CN FT +   +N  F
Sbjct: 441 FPFICNSFTKF--EFNTVF 457


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 EASNTAGTSSVEVTLKVYDKPSK 202
           EA   A  SSV+  + + DKP++
Sbjct: 54  EARLRANDSSVDPEIDIEDKPAQ 76


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 42  NDKEYNITTKEKTSVIRIKN 101
           N  EYN+  + + + I IKN
Sbjct: 397 NRDEYNVCFRPRNNSILIKN 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,983
Number of Sequences: 336
Number of extensions: 977
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)