Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0076
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.0  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 447 PPRFVPVPHPSCRF 406
           PPR  P+  PSC++
Sbjct: 30  PPRCPPIYEPSCQY 43


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 387 MSPHLTQSGMMGAGPGQ 437
           M P LT     G GPGQ
Sbjct: 380 MGPSLTPLASPGCGPGQ 396


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 387 MSPHLTQSGMMGAGPGQ 437
           M P LT     G GPGQ
Sbjct: 380 MGPSLTPLASPGCGPGQ 396


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +2

Query: 410 RHDGCGTGTNRGGRHE*SRPGCAAPGKPDAAPRHAASGPDIPAWKSSAISSL 565
           +H G      +GGR   +RPG     +   A   +A+    P +  +A   +
Sbjct: 28  QHYGAAVQVPQGGRRRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGM 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,088
Number of Sequences: 336
Number of extensions: 2725
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)