Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0054
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   3.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.0  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 135 VKEFLEPLQKLKIILET-TLHQFVNGYYLVHTHLF 34
           +K F+  +  L I+  + TLH   N Y    TH+F
Sbjct: 41  LKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIF 75


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 481 EEQHNAPIVQKILDILYATEDGFAPPE 561
           E+ +N P+V  ++   Y    G  PP+
Sbjct: 11  EQNNNVPVVLDVIPPHYNIHHGATPPQ 37


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 514 ILDILYATEDGFAPPEEIDGDNPHP 588
           +++ILYA  + ++ PE      P P
Sbjct: 386 LINILYANMNSYSVPEPTISTTPRP 410


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 378 PSDKRIESHSRWIRKRERLLLR 443
           PSD   ++  R+ R RERL+ R
Sbjct: 552 PSDYVKQTERRFYRHRERLVAR 573


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,164
Number of Sequences: 336
Number of extensions: 3706
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)