Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120039.Seq
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.75 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.9  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   6.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 445 LFLSWCNVKFFNCLVGLRCLFWWLII 368
           L L    + FF CL+  R L +W+I+
Sbjct: 292 LMLGTVVLAFFICLLPFRALTFWIIV 317


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 445 LFLSWCNVKFFNCLVGLRCLFWWLII 368
           L L    + FF CL+  R    W+I+
Sbjct: 290 LMLGTVVLSFFLCLIPFRVFILWIIL 315


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 IAKFNQGNKAKAKVPVTRAKKMPLRN 296
           I ++ +  K   ++PVT+   M +RN
Sbjct: 304 ILEYKRTKKLLYRIPVTKTDSMLIRN 329


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 IAKFNQGNKAKAKVPVTRAKKMPLRN 296
           I ++ +  K   ++PVT+   M +RN
Sbjct: 129 ILEYKRTKKLLYRIPVTKTDSMLIRN 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,962
Number of Sequences: 336
Number of extensions: 2139
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)