Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060083.seq
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.00 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.00 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.3  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.3  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 282 YECKLCLTLHNNEGSYLAH 338
           YECKLCL   +  G+   H
Sbjct: 106 YECKLCLLRFSQSGNLNRH 124


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 282 YECKLCLTLHNNEGSYLAH 338
           YECKLCL   +  G+   H
Sbjct: 362 YECKLCLLRFSQSGNLNRH 380


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 417 PEKPRIEPKKFVKIGRPGYRVTKQXD 494
           P  PRI      K G PG+    + D
Sbjct: 67  PSSPRISSPSSTKSGSPGFLTYTKAD 92


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 223 QAVVISPAGLCYFPTMTLHLLHQFY 149
           Q V I+  GL   PT+ L  LH+FY
Sbjct: 152 QYVRIAAKGL---PTLKLFALHEFY 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,725
Number of Sequences: 336
Number of extensions: 2563
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)