Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060062.seq
         (339 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   0.65 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   0.85 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   1.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   6.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   8.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 144 LLAHAVGLPRVLGHRNVNIIDQVRTDGRTYEYHHHGHA 31
           +  H V +P +     V ++D+V++   ++ +H HG+A
Sbjct: 567 MCTHQVDIP-LNAIVEVVLVDEVQSPNLSHPFHLHGYA 603


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 0.85
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 50  YS*VRPSVRTWSMMFTFLCPRTRGSPTA*ARRLVTKPXLNHGVLDVCSPPRSP 208
           YS   P+  TWS + T   P T  SPT     L + P   + +    +P +SP
Sbjct: 297 YSAPGPTYSTWSTVQT---PTTVMSPTINCWSLTSSPPPPYQISAQPTPSQSP 346


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 144 LLAHAVGLPRVLGHRNVNIIDQVRTDGRTYEYHHHGHA 31
           +  H V +P +     + ++D+V+    ++ +H HG+A
Sbjct: 567 MCTHKVDIP-LNAIVEIVLVDEVQQPNLSHPFHLHGYA 603


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 130  CVSKEAGHQTXAESWGTGRMFAPTKP 207
            C  K+ GH+    SW       PTKP
Sbjct: 1152 CEEKKPGHKPSTSSWQ-----KPTKP 1172


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 121 QPYCVSKEAGHQTXAESWGTGRMFAPTKPXRSWXR 225
           +P CV  + G Q  + +W      A  +P  S  R
Sbjct: 256 KPKCVLSDHGTQFISNTWQNSLRAADIQPTLSSIR 290


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 ARRLVTKPXLNHGVLDVCSPPRSPXG 214
           ARR + +P ++     V SP   P G
Sbjct: 388 ARRRIVQPMIDQSNRAVFSPHAGPSG 413


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 252 RSPLSXVDATVPTPXGLRGGEHTSSTP 172
           R PL   +  VP    L+    TSS+P
Sbjct: 266 RQPLDLYNFRVPQHQVLQSPSSTSSSP 292


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,063
Number of Sequences: 336
Number of extensions: 1239
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)