Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021010
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.9  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   6.7  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 134 NLSLSQVTSGTSAVLSWTPVAPESLRGHFKGYKIQTWTD 250
           +LSL+   + +   LSW  ++  S  G    +K  +W D
Sbjct: 362 SLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLD 400


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 340  VRILAYNGSFNGPASDTLSFVTPEGQP 420
            V + A+N    GP SD +   T EG P
Sbjct: 1074 VVVQAFNKVGAGPLSDDIKAYTAEGVP 1100



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 465  MLLKWEKPMEENGVL 509
            +L  W+ P+E NG++
Sbjct: 1217 ILASWKPPVEPNGIV 1231


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 461 EEPIG*ASKERTVEGCPSGVTKLRVSLAGPLK 366
           E+P+    K  T+ GC +  T +R   + P +
Sbjct: 233 EQPLAQTKKLATIVGCGTDETMIRCLKSRPAR 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,904
Number of Sequences: 336
Number of extensions: 2073
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)