Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0028
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   2.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 278 NWRSVPRQTISVCACAQD 331
           NW S P  T+   AC  D
Sbjct: 19  NWSSGPNATLQSSACTDD 36


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 310 RNSLPRHRSPISRIPSQGTL 251
           R +LP HR P   IP  G +
Sbjct: 374 RTNLPTHRHPQDEIPYCGKI 393


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 451 TRHQFYLHAKLDLTEGRLVVAD 516
           T+H+     +L  T+GRLV+ +
Sbjct: 203 TKHRLTGETRLSATKGRLVITE 224



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 352  NLRNPLDPHRIPGGRLDLRVKFWVPPHLLINE 447
            NLRN    H+      +L+ +FWV     I E
Sbjct: 1259 NLRNQNLSHQAKNLDSNLKYEFWVTAATTIGE 1290


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 15  KEYAINISQSELRRTFLNKYLRV*DKQL 98
           +E+A N+  S LRR  +   LR+ +KQ+
Sbjct: 134 REFASNMYLSRLRRIEIATCLRLSEKQV 161


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 449 GSLMSR*GGTQNLTRRSSRPP 387
           GSL+S  G T N +  S  PP
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPP 75


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 250 QECLEKVCEKLEIGAEADYFGLRVCPGSG 336
           ++CL K+ +   +      FG   CP  G
Sbjct: 142 RKCLYKLWKMPSLSEFLSLFGTETCPAIG 170


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +1

Query: 250 QECLEKVCEKLEIGAEADYFGLRVCPGSG 336
           ++CL K+ +   +      FG   CP  G
Sbjct: 142 RKCLYKLWKMPSLSEFLSLFGTETCPAIG 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,161
Number of Sequences: 336
Number of extensions: 2703
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)