Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0021
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    22   4.2  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   5.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.4  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 374 EMMHIAAPRYDMDRYGVVFRASPRQSDVM 460
           E   I    Y M+ + VVF  S +  DVM
Sbjct: 258 EFDQIVNVAYRMETWNVVFNGSRKNLDVM 286


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 104 SIMQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPT 235
           S+   I +  + SP+TV     K    PV+S   +  LP  + T
Sbjct: 194 SLSPGIYSEQSLSPDTVFGDDGKSEDVPVISLKNENELPQQHKT 237


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 371 QRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPYY 270
           QRS    R +  GN++     S   E  P+ PYY
Sbjct: 416 QRSTPSPRVY--GNVNENQDCSTPTENSPTKPYY 447


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 359 ACCAVEMMHIAAPRYDMDRYGVVF-RASPRQSDVMIVAG 472
           AC +  MM   A RYD+    ++F    P   D   +AG
Sbjct: 393 ACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAG 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,320
Number of Sequences: 336
Number of extensions: 4161
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)