Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0017
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.30 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.68 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.90 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.90 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   2.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 131 GCWNSNKPYTPENNVLIFSDPKLYEFPNDLKIDDEGLMW 247
           G WN    Y+P+N+   + +P  Y   +  +   +GL W
Sbjct: 74  GQWN----YSPDNHFEQYPNPTYYNLADPARDSRKGLFW 108


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 365 CIRMLFLQLHLLH*YCKCYSSLH 297
           C   +F  +HLL   C  Y +LH
Sbjct: 183 CCAFIFFNMHLLFLLCLDYFTLH 205


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 134 IPPHPGLPGH 105
           IPPHPGL  H
Sbjct: 230 IPPHPGLSPH 239


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 134 IPPHPGLPGH 105
           IPPHPGL  H
Sbjct: 122 IPPHPGLSPH 131


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 293 PNEVNYSIYSISAKDAIAGTACEYI 367
           PNE + S  S S+ ++ +  AC+++
Sbjct: 155 PNEASMSPQSTSSNNSASPKACQFL 179


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 293 PNEVNYSIYSISAKDAIAGTACEYI 367
           PNE + S  S S+ ++ +  AC+++
Sbjct: 175 PNEASMSPQSTSSNNSASPKACQFL 199


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 244 VDPGRQTPTVP-VQDPRS 294
           +DPGR++P+ P +  P S
Sbjct: 60  LDPGRKSPSSPRISSPSS 77


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/56 (19%), Positives = 22/56 (39%)
 Frame = +2

Query: 8   QEAFHDFKLLGDRGQGTQASASFYDPNTQVLFYGQVNRDGVGCWNSNKPYTPENNV 175
           Q  ++ F    +      +S ++Y  N    +YGQ+  D +    +       NN+
Sbjct: 278 QHEYNSFNWTANGHGHNTSSHNYYAQNYAPTYYGQMQPDYLNSQTTQNHMQAMNNM 333


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 110 GHRTTLEYWDHKNWPRPAFLV 48
           GH  T+EY   +  PR   LV
Sbjct: 845 GHNFTMEYLVSRGAPRGKLLV 865


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 57  VPCPLSPRSLKSWNASC 7
           VP P SPRS+     +C
Sbjct: 60  VPTPSSPRSISEDPLNC 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,283
Number of Sequences: 336
Number of extensions: 2611
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)