Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A08
         (955 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    29   0.070
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    23   2.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 0.070
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +1

Query: 442 IHADKNILRS---GALKKMKYLQVIIMNYNEITTVX-DVFX--PELXTLEVGYNTIXXXN 603
           IH D N + S    A   +K L+ + +  N+I T+  + F   PEL  L++ YN+I   +
Sbjct: 121 IHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLD 180

Query: 604 FD 609
           F+
Sbjct: 181 FN 182


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 340 LLCRSDSCPCRSLLNXXTHXLPQ 272
           LLC  D  PC +L N     LP+
Sbjct: 36  LLCALDKAPCDALGNQIKGALPE 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,195
Number of Sequences: 336
Number of extensions: 2523
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)